Index A | C | E | F | G | H | I | L | M | P | R | S | T | V A aggregate() (scembed.scIBAggregator method) available_methods (scembed.scIBAggregator attribute) C compute_and_show_embeddings() (scembed.IntegrationEvaluator method) E evaluate_scib() (scembed.IntegrationEvaluator method) F fetch_runs() (scembed.scIBAggregator method) fit() (scembed.methods.HarmonyMethod method) (scembed.methods.HVGMethod method) (scembed.methods.LIGERMethod method) (scembed.methods.PrecomputedEmbeddingMethod method) (scembed.methods.ResolVIMethod method) (scembed.methods.ScanoramaMethod method) (scembed.methods.scANVIMethod method) (scembed.methods.scPoliMethod method) (scembed.methods.scVIMethod method) (scembed.methods.scVIVAMethod method) fit_transform() (scembed.methods.HarmonyMethod method) (scembed.methods.HVGMethod method) (scembed.methods.LIGERMethod method) (scembed.methods.PrecomputedEmbeddingMethod method) (scembed.methods.ResolVIMethod method) (scembed.methods.ScanoramaMethod method) (scembed.methods.scANVIMethod method) (scembed.methods.scPoliMethod method) (scembed.methods.scVIMethod method) (scembed.methods.scVIVAMethod method) G get_method_runs() (scembed.scIBAggregator method) get_model_info() (scembed.methods.HarmonyMethod method) (scembed.methods.HVGMethod method) (scembed.methods.LIGERMethod method) (scembed.methods.PrecomputedEmbeddingMethod method) (scembed.methods.ResolVIMethod method) (scembed.methods.ScanoramaMethod method) (scembed.methods.scANVIMethod method) (scembed.methods.scPoliMethod method) (scembed.methods.scVIMethod method) (scembed.methods.scVIVAMethod method) get_models_and_embeddings() (scembed.scIBAggregator method) get_summary_metrics() (scembed.IntegrationEvaluator method) H HarmonyMethod (class in scembed.methods) HVGMethod (class in scembed.methods) I IntegrationEvaluator (class in scembed) L LIGERMethod (class in scembed.methods) load_artifact() (scembed.methods.HarmonyMethod method) (scembed.methods.HVGMethod method) (scembed.methods.LIGERMethod method) (scembed.methods.PrecomputedEmbeddingMethod method) (scembed.methods.ResolVIMethod method) (scembed.methods.ScanoramaMethod method) (scembed.methods.scANVIMethod method) (scembed.methods.scPoliMethod method) (scembed.methods.scVIMethod method) (scembed.methods.scVIVAMethod method) M module scembed, [1] scembed.methods, [1] P PrecomputedEmbeddingMethod (class in scembed.methods) R ResolVIMethod (class in scembed.methods) S save_embedding() (scembed.methods.HarmonyMethod method) (scembed.methods.HVGMethod method) (scembed.methods.LIGERMethod method) (scembed.methods.PrecomputedEmbeddingMethod method) (scembed.methods.ResolVIMethod method) (scembed.methods.ScanoramaMethod method) (scembed.methods.scANVIMethod method) (scembed.methods.scPoliMethod method) (scembed.methods.scVIMethod method) (scembed.methods.scVIVAMethod method) save_model() (scembed.methods.HarmonyMethod method) (scembed.methods.HVGMethod method) (scembed.methods.LIGERMethod method) (scembed.methods.PrecomputedEmbeddingMethod method) (scembed.methods.ResolVIMethod method) (scembed.methods.ScanoramaMethod method) (scembed.methods.scANVIMethod method) (scembed.methods.scPoliMethod method) (scembed.methods.scVIMethod method) (scembed.methods.scVIVAMethod method) ScanoramaMethod (class in scembed.methods) scANVIMethod (class in scembed.methods) scembed module, [1] scembed.methods module, [1] scIBAggregator (class in scembed) scPoliMethod (class in scembed.methods) scVIMethod (class in scembed.methods) scVIVAMethod (class in scembed.methods) setup() (scembed.methods.HarmonyMethod method) (scembed.methods.HVGMethod method) (scembed.methods.LIGERMethod method) (scembed.methods.PrecomputedEmbeddingMethod method) (scembed.methods.ResolVIMethod method) (scembed.methods.ScanoramaMethod method) (scembed.methods.scANVIMethod method) (scembed.methods.scPoliMethod method) (scembed.methods.scVIMethod method) (scembed.methods.scVIVAMethod method) T transform() (scembed.methods.HarmonyMethod method) (scembed.methods.HVGMethod method) (scembed.methods.LIGERMethod method) (scembed.methods.PrecomputedEmbeddingMethod method) (scembed.methods.ResolVIMethod method) (scembed.methods.ScanoramaMethod method) (scembed.methods.scANVIMethod method) (scembed.methods.scPoliMethod method) (scembed.methods.scVIMethod method) (scembed.methods.scVIVAMethod method) V validate_adata() (scembed.methods.HarmonyMethod method) (scembed.methods.HVGMethod method) (scembed.methods.LIGERMethod method) (scembed.methods.PrecomputedEmbeddingMethod method) (scembed.methods.ResolVIMethod method) (scembed.methods.ScanoramaMethod method) (scembed.methods.scANVIMethod method) (scembed.methods.scPoliMethod method) (scembed.methods.scVIMethod method) (scembed.methods.scVIVAMethod method) validate_spatial_adata() (scembed.methods.HarmonyMethod method) (scembed.methods.HVGMethod method) (scembed.methods.LIGERMethod method) (scembed.methods.PrecomputedEmbeddingMethod method) (scembed.methods.ResolVIMethod method) (scembed.methods.ScanoramaMethod method) (scembed.methods.scANVIMethod method) (scembed.methods.scPoliMethod method) (scembed.methods.scVIMethod method) (scembed.methods.scVIVAMethod method)