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scembed

  • API
    • Integration Methods
      • scembed.methods.HVGMethod
      • scembed.methods.LIGERMethod
      • scembed.methods.PrecomputedEmbeddingMethod
      • scembed.methods.ScanoramaMethod
      • scembed.methods.HarmonyMethod
      • scembed.methods.ResolVIMethod
      • scembed.methods.scANVIMethod
      • scembed.methods.scPoliMethod
      • scembed.methods.scVIMethod
      • scembed.methods.scVIVAMethod
    • Evaluation and Visualization
      • scembed.IntegrationEvaluator
    • scIB Results Retrieval and Aggregation
      • scembed.scIBAggregator
  • Changelog
  • Contributing guide
  • References
  • Basic usage of scembed
  • .md

API

API#

  • Integration Methods
    • CPU-based Methods
    • GPU-based Methods
  • Evaluation and Visualization
    • scembed.IntegrationEvaluator
  • scIB Results Retrieval and Aggregation
    • scembed.scIBAggregator

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🧬 Comparing embeddings for single-cell and spatial data

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Integration Methods

By Marius Lange

© Copyright 2026, Marius Lange..